<?xml version="1.0" encoding="utf-8"?>
<Journal>
<Journal-Info>
<name>International Journal of Pharma and Bio Sciences</name>
<website>ijpbs.net</website>
<email>editorijpbs@rediffmail.com (or) editorofijpbs@yahoo.com (or) prasmol@rediffmail.com</email>
</Journal-Info>
<article>
<article-id pub-id-type='other'>10.22376/ijpbs.2019.10.1.p1-12</article-id>
<issue_number>Volume 3 Issue 4</issue_number>
<issue_period>2012(October - December)</issue_period>
<title>PREDICTING BINDING AFFINITIES OF FOSMIDOMYCIN ANALOGUES AS DOXP-REDUCTOISOMERASE INHIBITORS BASED ON STRUCTURE-CENTRIC APPROACHES </title>
<abstract>Fosmidomycin and its derivatives belong to class DOX-reductoisomerase (DXR) inhibitors. A fosmidomycin analogues library was designed with 43 analogues, their molecular interactions and binding affinities with DXR (PDB ID: 1ONP) have been studied using Glide docking, QM-polarized ligand docking (QPLD), molecular mechanics based on generalized Born/surface area (MM-GB/SA) and multi-ligand bimolecular association with energetics (eMBrAcE). Prediction models were developed between DXR inhibition activity (pIC lessThan sub greaterThan 50 lessThan /sub greaterThan ) of these compounds and molecular descriptors like Glide score, QPLD lessThan sub greaterThan score lessThan /sub greaterThan , binding energy and calculated free energy of binding. The  lessThan i greaterThan r lessThan sup greaterThan 2 lessThan /sup greaterThan  lessThan /i greaterThan  lessThan sup greaterThan   lessThan /sup greaterThan value ranges from 0.608-0.807 indicating good data fit, and  lessThan i greaterThan r lessThan sup greaterThan 2 lessThan /sup greaterThan  lessThan sub greaterThan cv lessThan /sub greaterThan  lessThan /i greaterThan  ranges from 0.592-0.799 indicating acceptable predictive capabilities of models. Linear correlation between predicted and experimented pIC lessThan sub greaterThan 50 lessThan /sub greaterThan  was observed ( lessThan i greaterThan r lessThan sup greaterThan 2 lessThan /sup greaterThan  lessThan /i greaterThan  = 0.603-0.781). Low root mean square error (0.39-0.84) of inhibitors was established in all structure-centric approaches, an efficient tool for generating potential and specific inhibitors of DXR by testing rationally designed lead compounds based on fosmidomycin derivatization.</abstract>
<authors>AMIYA KUMAR PATEL</authors>
<keywords>DOX-reductoisomerase, Fosmidomycin, Docking and scoring, Virtual screening, Drug discovery. </keywords>
<pages>72-91</pages>
</article>
</Journal>
