<?xml version="1.0" encoding="utf-8"?>
<Journal>
<Journal-Info>
<name>International Journal of Pharma and Bio Sciences</name>
<website>ijpbs.net</website>
<email>editorijpbs@rediffmail.com (or) editorofijpbs@yahoo.com (or) prasmol@rediffmail.com</email>
</Journal-Info>
<article>
<article-id pub-id-type='other'>10.22376/ijpbs.2019.10.1.p1-12</article-id>
<issue_number>Volume 7 Issue 4</issue_number>
<issue_period>2016 (October - December)</issue_period>
<title><b>Structure prediction of the protein ccr5 delta 32 and structure comparison with ccr5</b> </title>
<abstract>Human immunodeficiency virus (HIV) is an obligate intracellular parasite of the CD4 lessThan sup greaterThan +  lessThan /sup greaterThan T-cells. This virus targets and kills helper T cells that play a vital role in immune response. Studies have shown that the interaction between the viral glycoprotein and host proteins like CD4 and Chemokine receptor type 5 (CCR5) enable the virus to get into the helper T cells. There exists a mutant form of the protein CCR5 called the CCR5 delta 32 or CCR5-D32 which does not interact with the viral glycoprotein in the same way as CCR5 does and hence, individuals carrying this mutation are resistant to HIV infection. Here I have predicted the structure of CCR5-D32 using Modeller 9.16. Structure alignment and active site analysis revealed that, though both CCR5 and CCR5-D32 had a similar structure, their active site makeup was different and thus their functions can be different. It was also observed that the mutant lacked a few amino acids like Tyr 187, Gln 188, Lys 191, Gln 194 and Thr 195 in its active site which were lost due to the frame-shift mutation.</abstract>
<authors>GOPALUNI SAI AKASH</authors>
<keywords>CCR5-D32, Homology Modelling, Energy Minimization, Molecular Dynamic Simulations, Structural alignme</keywords>
<pages>154-160</pages>
</article>
</Journal>
